STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katECatalase HPII protein; Serves to protect cells from the toxic effects of hydrogen peroxide. (713 aa)    
Predicted Functional Partners:
ERJ19857.1
Peroxiredoxin 6 1-Cys peroxiredoxin protein.
  
 
 0.977
ERJ17946.1
Peroxiredoxin 6 1-Cys peroxiredoxin protein.
  
 
 0.977
sodC
Superoxide dismutase Cu-Zn protein.
  
 
 0.944
ERJ17958.1
Superoxide dismutase Cu-Zn protein.
  
 
 0.944
hfq
Protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
    
 
 0.896
sdhB
Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.878
paaZ
Bifunctional protein PaaZ.
  
 0.846
icd
Isocitrate dehydrogenase NADP protein.
  
 0.825
ERJ18190.1
Dioxygenase protein.
  
 
 0.822
ERJ17588.1
Catechol 23-dioxygenase protein.
  
 
 0.822
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.