STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mucBPutative sigma factor regulatory protein. (338 aa)    
Predicted Functional Partners:
rseA
Sigma-E factor negative regulatory protein.
  
 
 0.999
rpoE
RNA polymerase sigma factor protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.959
yafS
Putative SAM-dependent methyltransferase protein.
  
     0.681
ERJ18280.1
Serine protease Do protein; Belongs to the peptidase S1C family.
  
  
 0.625
cysB
Transcriptional regulator CysB protein; Belongs to the LysR transcriptional regulatory family.
  
     0.574
nadB
Putative L-aspartate oxidase protein; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.542
zapD
Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.535
ERJ17978.1
Stage II sporulation protein.
  
     0.529
ERJ20011.1
Phytochrome sensor protein.
  
     0.524
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
    0.521
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.