STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ18190.1Dioxygenase protein. (310 aa)    
Predicted Functional Partners:
katE
Catalase HPII protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 
 0.822
ERJ20503.1
Amidohydrolase 2 protein.
    
 0.816
ERJ19447.1
Catechol 23-dioxygenase protein.
 
 
  0.808
ERJ18753.1
methylmalonyl-CoA carboxyltransferase protein.
  
 
 0.799
paaZ
Bifunctional protein PaaZ.
  
 
 0.798
pcaC
4-carboxymuconolactone decarboxylase protein.
  
 
 0.782
pcaH
Protocatechuate 34-dioxygenase beta subunit protein.
     
 0.781
pcaG
Protocatechuate 34-dioxygenase alpha subunit protein.
     
 0.781
ERJ19499.1
1-deoxy-D-xylulose-5-phosphate reductoisomerase protein.
  
 0.763
ERJ19501.1
Oxidoreductase protein.
  
 0.763
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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