STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ17647.1Glycoprotein 3-alpha-L-fucosyltransferase. (310 aa)    
Predicted Functional Partners:
egtB
Iron-dependent oxidoreductase EgtB protein.
  
   0.940
ERJ17648.1
Glycosyltransferase protein.
    
 0.882
rpoA
DNA-directed RNA polymerase subunit alpha protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.859
rpoZ
DNA-directed RNA polymerase subunit omega protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.832
ERJ20438.1
Type III restriction enzyme res subunit protein.
    
   0.831
ERJ20492.1
Sucrose phosphorylase protein.
   
 
 0.785
ERJ20573.1
NADH dehydrogenase protein.
  
 
 0.723
galE
UDP-glucose 4-epimerase protein.
  
 
 0.723
wcaG
NAD dependent epimerase-dehydratase protein.
  
 
 0.723
ERJ19306.1
NAD-dependent nucleoside diphosphate-sugar epimerase-dehydratase protein.
  
 
 0.723
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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