STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbpOPolysaccharide biosynthesis protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (428 aa)    
Predicted Functional Partners:
wecA
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase protein.
 
 
 0.913
uge
UDP-galacturonate 4-epimerase protein.
 
 0.892
rfbB
dTDP-glucose-46-dehydratase RfbB protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.887
ERJ17536.1
Glycoprotein 3-alpha-L-fucosyltransferase.
 
 0.833
wzc
Protein-tyrosine kinase chainlength regulator in capsular polysaccharide biosynthesi.
 
 
 0.810
ERJ18313.1
Superoxide dismutase Fe-Mn family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.807
ERJ20095.1
NAD-dependent oxidoreductase protein.
  
 
 0.774
ERJ20279.1
Hypothetical protein.
  
 
 0.760
wcaJ
Putative UDP-glucose lipid carrier transferase protein.
 
 
 0.747
cysE
Serine acetyltransferase protein.
  
 
 0.734
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.