STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ17548.1Putative capsular polysaccharide transport protein. (417 aa)    
Predicted Functional Partners:
wzc
Protein-tyrosine kinase chainlength regulator in capsular polysaccharide biosynthesi.
 
 0.999
ERJ18518.1
Capsular polysaccharide biosynthesis protein.
  
 0.913
wzb
Low molecular weight protein-tyrosine-phosphatase wzb.
 
  
 0.824
wcaJ
Putative UDP-glucose lipid carrier transferase protein.
 
 
 0.822
ERJ20279.1
Hypothetical protein.
  
 
 0.813
ERJ18519.1
Capsular exopolysaccharide family protein.
 
 0.809
xanB
Xanthan biosynthesis protein XanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.722
ERJ19774.1
Ornithine carbamoyltransferase protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.653
ERJ18725.1
Putative lipoprotein.
 
  
 0.603
cysE
Serine acetyltransferase protein.
  
 
 0.514
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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