STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ17478.1AAA domain protein. (477 aa)    
Predicted Functional Partners:
oppD
Oligopeptide transport ATP-binding protein OppD.
  
 
 0.705
oppF
Putative oligopeptide transport ATP-binding ABC transport protein; Belongs to the ABC transporter superfamily.
  
 
 0.705
ERJ20104.1
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.705
ERJ20105.1
ABC di-oligopeptide transporter ATPase subunit protein; Belongs to the ABC transporter superfamily.
  
 
 0.705
nasA
Nitrate reductase large subunit protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
  0.656
oppA
Oligopeptide ABC transporter periplasmic binding protein.
  
 
 0.630
oppB
Oligopeptide transport system permease protein.
  
 
 0.614
ERJ20497.1
Binding-protein-dependent transport systems inner membrane component.
  
 
 0.614
ERJ20107.1
ABC transporter permease protein; Overlaps CDS with the same product name.
  
 
 0.614
oppC
Oligopeptide transport system permease protein.
  
 
 0.612
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.