STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTIA_0277ABC-2-type transporter, permease protein (probable substrate copper). (274 aa)    
Predicted Functional Partners:
nosD
NosL family copper-binding protein.
 
 
 0.966
nosL
NosL family copper-binding protein.
 
 
 0.938
nodI
ABC transporter, ATP-binding protein (probable substrate copper).
 
   0.853
HTIA_0282
Thioredoxin domain protein.
 
     0.607
prrC
Copper chaperone SCO1/SenC.
 
     0.594
HTIA_0276
Alpha/beta hydrolase fold protein.
       0.590
HTIA_2253
Sodium/calcium exchanger family protein.
  
     0.583
HTIA_0337
Conserved hypothetical protein (DUF2797).
  
     0.572
HTIA_0283
Cytochrome c-type biogenesis protein.
 
     0.541
HTIA_1796
Conserved hypothetical protein.
  
     0.528
Your Current Organism:
Halorhabdus tiamatea
NCBI taxonomy Id: 1033806
Other names: H. tiamatea SARL4B, Halorhabdus tiamatea JCM 14471, Halorhabdus tiamatea SARL4B, Halorhabdus tiamatea str. SARL4B, Halorhabdus tiamatea strain SARL4B
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