STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTIA_1691Archaeal sugar-specific transcriptional regulator, TrmB family. (288 aa)    
Predicted Functional Partners:
HTIA_2092
Archaeal sugar-specific transcriptional regulator, TrmB family.
  
     0.629
HTIA_1984
Transposase (IS891/IS1136/IS1341/IS605).
  
     0.612
HTIA_2470
Transposase (IS891/IS1136/IS1341/IS605).
  
     0.612
HTIA_0974
Transposase (IS891/IS1136/IS1341/IS605).
  
     0.605
npa
Transposase (IS891/IS1136/IS1341/IS605).
  
     0.597
HTIA_2011
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.596
HTIA_2455
Transposase (IS891/IS1136/IS1341/IS605).
  
     0.582
hemL
Glutamate-1-semialdehyde aminotransferase.
       0.566
HTIA_0941
Sugar metabolism cluster protein.
  
     0.555
HTIA_2197
Conserved hypothetical protein, putative transcriptional regulator.
  
     0.554
Your Current Organism:
Halorhabdus tiamatea
NCBI taxonomy Id: 1033806
Other names: H. tiamatea SARL4B, Halorhabdus tiamatea JCM 14471, Halorhabdus tiamatea SARL4B, Halorhabdus tiamatea str. SARL4B, Halorhabdus tiamatea strain SARL4B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.