STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ13718.1Putative protease protein. (312 aa)    
Predicted Functional Partners:
yrrM
Putative O-methyltransferase YrrM protein.
 
  
 0.871
ERJ13719.1
Peptidase U32 family protein.
 
    
0.831
udk
Uridine kinase protein.
  
    0.810
greA
Transcription elongation factor GreA protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.543
ERJ13887.1
PTS system fructose-specific IIA component protein.
  
  
 0.537
ERJ13228.1
Trans-aconitate 2-methyltransferase protein.
  
  
 0.508
rlmN
Putative dual-specificity RNA methyltransferase RlmN protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
 
 0.505
ERJ11061.1
Family 2 glycosyl transferase protein.
  
  
 0.481
ERJ13396.1
tRNA dimethylallyltransferase protein.
 
    0.450
ERJ13716.1
Hypothetical protein.
       0.444
Your Current Organism:
Haloplasma contractile
NCBI taxonomy Id: 1033810
Other names: H. contractile SSD-17B, Haloplasma contractile SSD-17B, Haloplasma contractile str. SSD-17B, Haloplasma contractile strain SSD-17B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.