STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkRPutative spore germination protein YfkR. (167 aa)    
Predicted Functional Partners:
gerKB
Spore germination protein KB.
  
    0.777
ERJ13866.1
GerA spore germination protein.
 
  
 0.777
ERJ11491.1
Spore germination protein KB.
  
    0.777
ERJ11565.1
Spore germination protein KB.
  
    0.777
ERJ11566.1
Spore germination protein KB; Overlaps CDS with the same product name.
  
    0.777
ERJ11567.1
Spore germination protein KB; Overlaps CDS with the same product name.
  
    0.777
gerKA
Spore germination protein KA.
 
  
 0.777
ERJ13290.1
Spore germination protein.
  
    0.776
ERJ13293.1
Spore germination protein; Overlaps CDS with the same product name.
 
  
 0.776
ERJ11570.1
GerA spore germination protein.
 
  
 0.761
Your Current Organism:
Haloplasma contractile
NCBI taxonomy Id: 1033810
Other names: H. contractile SSD-17B, Haloplasma contractile SSD-17B, Haloplasma contractile str. SSD-17B, Haloplasma contractile strain SSD-17B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.