STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WANG_0586Possible type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1014 aa)    
Predicted Functional Partners:
WANG_1560
N-6 DNA methylase.
 
 0.994
WANG_0587
Type I site-specific deoxyribonuclease specificity subunit.
 
 
 0.990
WANG_0313
Type I site-specific deoxyribonuclease.
 
 0.909
WANG_0585
Protein of hypothetical function DUF262.
 
     0.843
WANG_1562
Type I site-specific deoxyribonuclease methyltransferase subunit.
  
 
 0.835
WANG_0589
Type I R/M system specificity subunit.
 
  
 0.795
hsdS
HsdS.
  
 0.794
WANG_1082
SNF2 family protein.
 
 
 0.737
WANG_1563
Type I restriction-modification system.
  
  
 0.528
WANG_1630
DNA/RNA helicase, DEAD/DEAH box family.
  
  
 0.430
Your Current Organism:
Lactobacillus kefiranofaciens
NCBI taxonomy Id: 1033837
Other names: L. kefiranofaciens ZW3, Lactobacillus kefiranofaciens ZW3, Lactobacillus kefiranofaciens str. ZW3, Lactobacillus kefiranofaciens strain ZW3
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