STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WANG_1207XRE family transcriptional regulator. (185 aa)    
Predicted Functional Partners:
WANG_1229
Hypothetical protein.
 
     0.534
WANG_0362
ABC transporter ATP binding and permease protein.
  
     0.507
WANG_1108
Serine/threonine protein kinase.
  
 
   0.494
WANG_0363
ABC transporter ATP binding and permease.
  
     0.464
WANG_0989
Zn-dependent peptidase.
 
     0.464
WANG_0051
DNA-directed RNA polymerase sigma factor, sigma H.
 
  
 0.426
WANG_1171
Hypothetical protein.
   
 
 0.426
WANG_1206
Esterase.
       0.426
ccpA
Catabolite control protein A.
      
 0.420
WANG_1230
ABC transporter.
  
     0.414
Your Current Organism:
Lactobacillus kefiranofaciens
NCBI taxonomy Id: 1033837
Other names: L. kefiranofaciens ZW3, Lactobacillus kefiranofaciens ZW3, Lactobacillus kefiranofaciens str. ZW3, Lactobacillus kefiranofaciens strain ZW3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.