STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps34Phosphatidylinositol 3-kinase VPS34. (921 aa)    
Predicted Functional Partners:
atg6
Vacuolar protein sorting-associated protein atg6.
    
 0.999
VPS15
Putative serine/threonine-protein kinase VPS15.
   
 0.999
Uvrag
UV radiation resistance associated protein.
    
 0.998
ATG1
Serine/threonine-protein kinase ATG1.
    
 0.990
CFIMG_008480RA
Protein kinase domain-containing protein.
    
 0.930
MKNK2
MAP kinase-interacting serine/threonine-protein kinase 2.
    
 0.930
ypt5
GTP-binding protein ypt5.
    
 0.926
VPS21
Vacuolar protein sorting-associated protein 21.
    
 0.926
FAB1
1-phosphatidylinositol 3-phosphate 5-kinase FAB1.
  
  
 0.900
CFIMG_001806RA
Uncharacterized protein.
    
 0.898
Your Current Organism:
Ceratocystis fimbriata
NCBI taxonomy Id: 1035309
Other names: C. fimbriata CBS 114723, Ceratocystis fimbriata C1421, Ceratocystis fimbriata CBS 114723, Ceratocystis fimbriata CBS114723
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