STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU83853.1Type VI secretion system protein ImpM. (328 aa)    
Predicted Functional Partners:
SFU83866.1
Type VI secretion system protein ImpL.
 
  
 0.970
SFU83841.1
OmpA-OmpF porin, OOP family.
 
  
 0.953
SFU83889.1
Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion.
 
   
 0.953
SFU83831.1
Type VI secretion system protein ImpA.
 
  
 0.949
SFU83901.1
Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK.
 
   
 0.949
SFU99297.1
Type VI secretion system protein ImpK.
  
  
 0.912
SFV04689.1
Type VI secretion system protein ImpK.
  
  
 0.912
SFU83691.1
Type VI secretion system protein ImpK.
 
  
 0.898
SFV04771.1
Type VI secretion system protein ImpE.
  
  
 0.897
SFU83758.1
Type VI secretion system protein ImpF.
 
  
 0.881
Your Current Organism:
Massilia namucuonensis
NCBI taxonomy Id: 1035707
Other names: CGMCC 1.11014, DSM 25159, M. namucuonensis, Massilia namucuonensis Kong et al. 2013, Massilia sp. 333-1-0411, strain 333-1-0411
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.