STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV02585.1Ferredoxin, 2Fe-2S. (107 aa)    
Predicted Functional Partners:
SFU87355.1
FeS assembly scaffold apoprotein IscU /Modular FeS cluster scaffolding protein NifU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
 
 0.990
SFU53594.1
Nitrogen fixation protein NifU.
  
 0.987
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
 
 0.983
SFV02578.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
 
 
 0.982
SFU87343.1
Iron-binding apoprotein IscA; Belongs to the HesB/IscA family.
  
 
 0.971
SFV07791.1
Cysteine sulfinate desulfinase/cysteine desulfurase.
 
 0.960
SFV02611.1
Cytochrome P450.
 
 0.956
SFU28817.1
Cytochrome P450.
  
 0.947
SFU53209.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
   
 0.943
SFV17002.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
   
 0.943
Your Current Organism:
Massilia namucuonensis
NCBI taxonomy Id: 1035707
Other names: CGMCC 1.11014, DSM 25159, M. namucuonensis, Massilia namucuonensis Kong et al. 2013, Massilia sp. 333-1-0411, strain 333-1-0411
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.