STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER29906.1Proline racemase/trans-L-3-hydroxyproline dehydratase; Belongs to the proline racemase family. (335 aa)    
Predicted Functional Partners:
SEQ59867.1
Ornithine cyclodeaminase.
 
  
 0.864
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
 0.806
SEQ62457.1
Glycine/D-amino acid oxidase.
 
  
  0.640
SEQ62541.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.625
SEQ57689.1
Pyrroline-5-carboxylate reductase.
     
 0.617
SEQ62509.1
NADP-dependent aldehyde dehydrogenase.
  
 
  0.529
SEQ60229.1
D-amino-acid dehydrogenase.
  
  
  0.509
SEQ62402.1
NADP-dependent aldehyde dehydrogenase.
 
  
  0.496
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
       0.444
SEQ62428.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
  
  0.410
Your Current Organism:
Friedmanniella flava
NCBI taxonomy Id: 1036181
Other names: CGMCC 4.6856, Friedmanniella flava Zhang et al. 2013, Friedmanniella sp. W6, JCM 17701, strain W6
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