Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C0W2D4_9ACTO | C0W2D6_9ACTO | GCA_001067145_01314 | GCA_001067145_01312 | Unannotated protein. | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | 0.518 |
C0W2D4_9ACTO | C0W2D7_9ACTO | GCA_001067145_01314 | GCA_001067145_01311 | Unannotated protein. | Unannotated protein. | 0.518 |
C0W2D4_9ACTO | ftsE | GCA_001067145_01314 | GCA_001067145_01313 | Unannotated protein. | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division. | 0.528 |
C0W2D6_9ACTO | C0W2D4_9ACTO | GCA_001067145_01312 | GCA_001067145_01314 | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | Unannotated protein. | 0.518 |
C0W2D6_9ACTO | C0W2D7_9ACTO | GCA_001067145_01312 | GCA_001067145_01311 | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | Unannotated protein. | 0.898 |
C0W2D6_9ACTO | ftsE | GCA_001067145_01312 | GCA_001067145_01313 | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division. | 0.999 |
C0W2D6_9ACTO | smpB | GCA_001067145_01312 | GCA_001067145_01310 | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | Unannotated protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.730 |
C0W2D7_9ACTO | C0W2D4_9ACTO | GCA_001067145_01311 | GCA_001067145_01314 | Unannotated protein. | Unannotated protein. | 0.518 |
C0W2D7_9ACTO | C0W2D6_9ACTO | GCA_001067145_01311 | GCA_001067145_01312 | Unannotated protein. | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | 0.898 |
C0W2D7_9ACTO | C0W4W8_9ACTO | GCA_001067145_01311 | GCA_001067145_00226 | Unannotated protein. | Unannotated protein. | 0.596 |
C0W2D7_9ACTO | C0W567_9ACTO | GCA_001067145_01311 | GCA_001067145_00094 | Unannotated protein. | Unannotated protein. | 0.619 |
C0W2D7_9ACTO | C0W8N4_9ACTO | GCA_001067145_01311 | GCA_001067145_01869 | Unannotated protein. | Unannotated protein. | 0.446 |
C0W2D7_9ACTO | ftsE | GCA_001067145_01311 | GCA_001067145_01313 | Unannotated protein. | Unannotated protein; Part of the ABC transporter FtsEX involved in cellular division. | 0.874 |
C0W2D7_9ACTO | murE | GCA_001067145_01311 | GCA_001067145_00957 | Unannotated protein. | Unannotated protein; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | 0.431 |
C0W2D7_9ACTO | murF | GCA_001067145_01311 | GCA_001067145_00958 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.414 |
C0W2D7_9ACTO | smpB | GCA_001067145_01311 | GCA_001067145_01310 | Unannotated protein. | Unannotated protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.711 |
C0W4W8_9ACTO | C0W2D7_9ACTO | GCA_001067145_00226 | GCA_001067145_01311 | Unannotated protein. | Unannotated protein. | 0.596 |
C0W4W8_9ACTO | C0W567_9ACTO | GCA_001067145_00226 | GCA_001067145_00094 | Unannotated protein. | Unannotated protein. | 0.524 |
C0W4W8_9ACTO | C0W8N4_9ACTO | GCA_001067145_00226 | GCA_001067145_01869 | Unannotated protein. | Unannotated protein. | 0.444 |
C0W4W8_9ACTO | murF | GCA_001067145_00226 | GCA_001067145_00958 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.470 |
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