STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK60756.1COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (335 aa)    
Predicted Functional Partners:
AFK60757.1
Isochorismatase; COG1335 Amidases related to nicotinamidase.
 
     0.763
AFK63653.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.757
AFK62821.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.583
AFK63314.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.555
AFK64027.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.476
AFK63954.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.462
AFK61556.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.427
AFK60824.1
Regulatory helix-turn-helix protein, lysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.415
AFK62834.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.411
AFK60817.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.409
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.