STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK60841.13-phenylpropionate dioxygenase ferredoxin-NAD(+) reductase component; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases. (428 aa)    
Predicted Functional Partners:
AFK60842.1
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 0.995
AFK60840.1
Ring hydroxylating alpha subunit; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
  
 0.906
AFK61406.1
Patatin; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
 
      0.833
AFK60839.1
Ring hydroxylating subunit beta family protein 4; COG5517 Small subunit of phenylpropionate dioxygenase.
 
  
 0.777
AFK62437.1
Ferredoxin, 2Fe-2S; COG0633 Ferredoxin.
  
 
 0.711
AFK63674.1
COG4311 Sarcosine oxidase delta subunit.
  
 
 0.677
AFK62810.1
COG2124 Cytochrome P450.
  
 
 0.644
AFK63677.1
COG4583 Sarcosine oxidase gamma subunit.
  
 
 0.611
AFK62424.1
COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 
 0.535
AFK61672.1
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
 
 0.523
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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