STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK60843.1Tat pathway signal sequence domain-containing protein 12; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (363 aa)    
Predicted Functional Partners:
AFK60833.1
Hypothetical protein; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
  
 0.803
AFK60832.1
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.791
AFK62935.1
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.791
AFK63696.1
Tripartite ATP-independent periplasmic transporter DctQ; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.780
AFK63781.1
TRAP C4-dicarboxylate transporter permease DctM; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
  
 0.771
AFK61566.1
COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.741
AFK63782.1
Tripartite ATP-independent periplasmic transporter, DctQ component; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.634
AFK63697.1
TRAP-type C4-dicarboxylate transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.516
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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