STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK60919.1COG0583 Transcriptional regulator. (71 aa)    
Predicted Functional Partners:
AFK60920.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.820
AFK60921.1
Nmra family protein; COG2910 Putative NADH-flavin reductase.
 
     0.647
AFK60922.1
NAD-dependent epimerase/dehydratase; COG2910 Putative NADH-flavin reductase.
 
     0.618
AFK60808.1
COG1802 Transcriptional regulators.
  
    0.586
AFK60918.1
Hypothetical protein.
       0.476
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.