STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK60967.1COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (328 aa)    
Predicted Functional Partners:
AFK60966.1
Putative isochorismatase hydrolase family protein; COG1335 Amidases related to nicotinamidase.
    0.971
AFK60963.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.497
AFK60964.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.497
AFK60965.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.497
AFK62868.1
Hypothetical protein; COG1335 Amidases related to nicotinamidase.
 
    0.435
AFK60968.1
COG1414 Transcriptional regulator.
  
  
 0.429
AFK60895.1
COG0262 Dihydrofolate reductase.
 
    0.428
AFK64361.1
YesN family response regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.421
AFK62893.1
COG1396 Predicted transcriptional regulators.
  
  
 0.403
AFK64224.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.403
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.