STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61064.1Hypothetical protein; COG0500 SAM-dependent methyltransferases. (273 aa)    
Predicted Functional Partners:
AFK61065.1
COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.797
AFK61066.1
DNA topoisomerase III; COG0550 Topoisomerase IA.
       0.700
AFK62293.1
acetate/CoA ligase; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
  
     0.590
AFK63272.1
COG4394 Uncharacterized protein conserved in bacteria.
  
     0.559
AFK62800.1
Transmembrane protein 1; COG2976 Uncharacterized protein conserved in bacteria.
  
     0.512
AFK63515.1
Phasin family domain-containing protein.
  
     0.498
AFK63129.1
Dioxygenase; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
  
     0.472
AFK61137.1
Transmembrane protein.
  
     0.468
AFK62943.1
COG3308 Predicted membrane protein.
  
     0.464
AFK61366.1
Hypothetical protein; COG2822 Predicted periplasmic lipoprotein involved in iron transport.
  
     0.455
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.