STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61067.1COG4984 Predicted membrane protein. (402 aa)    
Predicted Functional Partners:
AFK61068.1
Hypothetical protein; COG4929 Uncharacterized membrane-anchored protein.
     0.994
AFK61069.1
COG4929 Uncharacterized membrane-anchored protein.
       0.787
AFK64190.1
Inner membrane protein.
  
     0.509
AFK62291.1
COG4378 Uncharacterized protein conserved in bacteria.
  
     0.478
AFK61066.1
DNA topoisomerase III; COG0550 Topoisomerase IA.
       0.475
AFK62285.1
Hypothetical protein.
  
     0.447
AFK63836.1
COG0728 Uncharacterized membrane protein, putative virulence factor.
  
     0.413
AFK61064.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.400
AFK61065.1
COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.400
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.