STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61103.1Hypothetical protein; COG2906 Bacterioferritin-associated ferredoxin. (88 aa)    
Predicted Functional Partners:
AFK62061.1
Bacterioferritin; Iron-storage protein.
 
 
 0.830
AFK61104.1
Bacterioferritin; Iron-storage protein.
 
 
 0.809
AFK61817.1
Integral membrane protein.
  
     0.643
AFK63286.1
Ferritin Dps family protein; COG2193 Bacterioferritin (cytochrome b1).
  
 
 0.621
AFK62716.1
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  
 0.569
AFK61639.1
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha.
  
     0.494
AFK62291.1
COG4378 Uncharacterized protein conserved in bacteria.
  
    0.492
AFK63859.1
Surface antigen family protein; COG0729 Outer membrane protein.
  
     0.492
AFK63628.1
Putative TolQ-like translocation protein; COG0811 Biopolymer transport proteins.
  
  
 0.475
AFK63630.1
Hypothetical protein.
  
  
 0.454
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.