STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61132.1Hypothetical protein; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins. (181 aa)    
Predicted Functional Partners:
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
    0.598
AFK62083.1
Alcaligin biosynthesis protein; COG3486 Lysine/ornithine N-monooxygenase.
  
  
 0.567
AFK61129.1
COG2431 Predicted membrane protein.
       0.498
AFK61130.1
Hypothetical protein.
       0.498
AFK61131.1
Hypothetical protein.
       0.498
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.491
AFK61918.1
COG0412 Dienelactone hydrolase and related enzymes.
 
     0.453
AFK61133.1
Lysine-arginine-ornithine-binding periplasmic protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.451
AFK61134.1
Polar amino acid ABC transporter inner membrane subunit; COG4215 ABC-type arginine transport system, permease component.
       0.451
AFK61135.1
Polar amino acid ABC transporter inner membrane subunit; COG4160 ABC-type arginine/histidine transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.451
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.