STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61154.1Tripartite ATP-independent periplasmic transporter DctQ; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (190 aa)    
Predicted Functional Partners:
AFK61155.1
COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
 0.968
AFK64097.1
TRAP dicarboxylate transporter subunit DctP; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.787
AFK64449.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.775
AFK61156.1
TRAP dicarboxylate transporter subunit DctM; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
 
 0.767
AFK63533.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.750
AFK61398.1
Hypothetical protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.735
AFK63535.1
Putative inner membrane protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
 0.720
AFK61548.1
TRAP dicarboxylate transporter subunit DctP; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.674
AFK62733.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.667
AFK64450.1
COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.664
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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