STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61162.1COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (291 aa)    
Predicted Functional Partners:
AFK61163.1
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
     0.764
AFK63654.1
COG0583 Transcriptional regulator.
  
     0.756
AFK63653.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.743
AFK61389.1
DNA-binding transcriptional activator GcvA; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.690
AFK62874.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.646
AFK63954.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.644
AFK61556.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.642
AFK61191.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.635
AFK62961.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.633
AFK62834.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.605
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.