STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61166.1Dehydratase; COG2030 Acyl dehydratase. (153 aa)    
Predicted Functional Partners:
AFK63294.1
Hypothetical protein; COG2030 Acyl dehydratase.
  
     0.760
AFK63328.1
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
   0.676
AFK61165.1
COG3181 Uncharacterized protein conserved in bacteria.
       0.661
AFK64095.1
Hypothetical protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
     0.639
AFK61167.1
L-carnitine dehydratase/bile acid-inducible protein F; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
  
 
 0.624
AFK61178.1
Hypothetical protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 0.549
AFK63330.1
Thiolase; COG0183 Acetyl-CoA acetyltransferase.
 
 
 0.541
AFK64098.1
L-carnitine dehydratase/bile acid-inducible protein F; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
 
 0.500
AFK62810.1
COG2124 Cytochrome P450.
 
  
 0.491
AFK61164.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.461
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.