STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61181.1COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (324 aa)    
Predicted Functional Partners:
AFK60895.1
COG0262 Dihydrofolate reductase.
 
    0.521
AFK63855.1
COG2081 Predicted flavoproteins.
 
      0.469
AFK62893.1
COG1396 Predicted transcriptional regulators.
  
  
 0.432
AFK64361.1
YesN family response regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
0.427
AFK63944.1
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.425
AFK64224.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.407
AFK64138.1
COG1846 Transcriptional regulators.
  
  
 0.406
AFK64352.1
NAD-dependent epimerase/dehydratase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
    0.405
AFK60966.1
Putative isochorismatase hydrolase family protein; COG1335 Amidases related to nicotinamidase.
 
    0.400
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.