STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61190.1COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (324 aa)    
Predicted Functional Partners:
AFK61189.1
Isothiocyanate resistance protein SaxB, isochorismatase family; COG1335 Amidases related to nicotinamidase.
 
    0.744
AFK62868.1
Hypothetical protein; COG1335 Amidases related to nicotinamidase.
 
    0.520
AFK63909.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.456
AFK64224.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.453
AFK64361.1
YesN family response regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
0.430
AFK60966.1
Putative isochorismatase hydrolase family protein; COG1335 Amidases related to nicotinamidase.
    0.422
AFK61191.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.420
AFK64352.1
NAD-dependent epimerase/dehydratase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
    0.419
AFK60895.1
COG0262 Dihydrofolate reductase.
 
    0.404
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.