STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61206.1Hypothetical protein. (246 aa)    
Predicted Functional Partners:
AFK61207.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
  
 0.974
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.919
AFK61205.1
Hypothetical protein.
 
     0.835
AFK61201.1
Putative bifunctional protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.810
AFK61204.1
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
  
 0.802
AFK61202.1
COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.672
AFK61243.1
COG2857 Cytochrome c1.
 
 
 
 0.642
AFK63444.1
Cytochrome C-552 1; COG2863 Cytochrome c553.
  
     0.534
AFK61620.1
COG2863 Cytochrome c553.
  
     0.497
AFK64374.1
COG2863 Cytochrome c553.
  
     0.481
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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