STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61212.1Hypothetical protein; COG1943 Transposase and inactivated derivatives. (238 aa)    
Predicted Functional Partners:
AFK63519.1
Thioredoxin-like protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
   
 0.662
AFK62958.1
Hypothetical protein.
  
    0.584
AFK61302.1
Hypothetical protein.
  
     0.566
AFK61211.1
Esterase; Serine hydrolase involved in the detoxification of formaldehyde.
       0.521
AFK62903.1
COG3203 Outer membrane protein (porin).
  
     0.512
AFK61373.1
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
  
     0.497
AFK62600.1
Spermidine synthase-like protein; COG0421 Spermidine synthase.
 
    0.487
AFK64331.1
Hypothetical protein.
  
     0.487
AFK62793.1
Transferase; COG2236 Predicted phosphoribosyltransferases.
  
     0.451
lptE
Hypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
    0.451
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.