STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61252.1Ferric uptake regulator family protein; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family. (171 aa)    
Predicted Functional Partners:
AFK62092.1
Cation ABC transporter ATP-binding protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component.
  
  
 0.716
AFK61254.1
Transport protein ATP-binding protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component.
  
  
 0.676
AFK61255.1
ABC transporter permease; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
  
 0.670
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.623
AFK61251.1
CobW/HypB/UreG, nucleotide-binding domain-containing protein 5; COG0523 Putative GTPases (G3E family).
  
  
 0.573
AFK61106.1
Hypothetical protein; COG2345 Predicted transcriptional regulator.
  
    0.561
AFK62225.1
Alkyl hydroperoxide reductase; COG0450 Peroxiredoxin.
  
  
 0.500
AFK62981.1
Antioxidant protein; COG0450 Peroxiredoxin.
  
  
 0.500
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.484
AFK63090.1
Hypothetical protein; COG0726 Predicted xylanase/chitin deacetylase.
  
     0.481
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.