STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gphPhosphoglycolate phosphatase, bacterial 1; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. (234 aa)    
Predicted Functional Partners:
AFK61284.1
COG0036 Pentose-5-phosphate-3-epimerase.
 
  
 0.964
AFK61455.1
HAD-superfamily hydrolase; COG0546 Predicted phosphatases.
  
  
  0.951
AFK63480.1
Haloacid dehalogenase-like protein hydrolase; COG0546 Predicted phosphatases.
  
  
 
0.927
AFK62254.1
Hydrolase; COG0546 Predicted phosphatases.
  
  
 
0.926
AFK63175.1
COG4451 Ribulose bisphosphate carboxylase small subunit.
    
 0.911
AFK61550.1
RuBisCO-like protein; COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit; Belongs to the RuBisCO large chain family.
    
 0.909
rbcL
COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit; Belongs to the RuBisCO large chain family.
    
 0.909
glcE
Glycolate oxidase FAD binding subunit; COG0277 FAD/FMN-containing dehydrogenases.
    
 0.907
glcF
Glycolate oxidase iron-sulfur subunit; COG0247 Fe-S oxidoreductase.
    
 0.907
AFK61904.1
COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
    
 0.905
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.