STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61328.1Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (165 aa)    
Predicted Functional Partners:
AFK61329.1
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
     
 0.497
AFK61330.1
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
     
 0.497
AFK62456.1
OmpA/MotB domain-containing protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
 
 0.464
AFK61789.1
COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
  
 0.462
AFK62368.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
 
 0.460
AFK64181.1
Inner membrane lipoprotein YiaD; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
 
 0.433
AFK61509.1
OmpA/MotB domain protein; COG2913 Small protein A (tmRNA-binding).
 
 
 0.432
AFK62365.1
Inner membrane lipoprotein YiaD; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
 
 0.417
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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