STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61341.1Aspartate racemase family protein 2; COG1794 Aspartate racemase; Belongs to the aspartate/glutamate racemases family. (270 aa)    
Predicted Functional Partners:
AFK61382.1
COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D.
 
  
 0.923
AFK63834.1
COG0367 Asparagine synthase (glutamine-hydrolyzing).
    
 0.922
AFK61753.1
Type II L-asparaginase; COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; Belongs to the asparaginase 1 family.
    
 0.911
pyrB
COG0540 Aspartate carbamoyltransferase, catalytic chain.
     
 0.910
AFK60810.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.905
AFK61574.1
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
    
  0.902
AFK61332.1
Isoaspartyl peptidase; COG1446 Asparaginase.
     
  0.900
argG
COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
  0.900
maiA
Asp/Glu/hydantoin racemase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
     
 0.872
nadX
Putative L-aspartate dehydrogenase; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
  
  
  0.828
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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