STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61347.1FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating). (127 aa)    
Predicted Functional Partners:
AFK61346.1
FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
     0.989
AFK63077.1
D-amino acid dehydrogenase 2 small subunit; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.774
AFK63687.1
D-amino-acid dehydrogenase; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.774
AFK63407.1
D-amino acid dehydrogenase small subunit; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.763
AFK61348.1
COG1171 Threonine dehydratase.
  
 
 0.596
AFK64109.1
COG3938 Proline racemase; Belongs to the proline racemase family.
 
   
 0.592
AFK61349.1
COG0477 Permeases of the major facilitator superfamily.
       0.528
AFK61350.1
Hypothetical protein.
       0.528
AFK63108.1
Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.418
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.