STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61377.1COG3663 G:T/U mismatch-specific DNA glycosylase. (201 aa)    
Predicted Functional Partners:
AFK62602.1
COG0708 Exonuclease III.
  
 
 0.732
AFK64119.1
methylated-DNA-(protein)-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
 
  
 0.662
AFK61375.1
Cyclohexadienyl dehydratase; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.567
AFK61376.1
ArtI protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.567
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.458
AFK61378.1
Hypothetical protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
       0.422
AFK61379.1
COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
       0.422
AFK61380.1
Binding-protein-dependent transporter inner membrane component family protein 56; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.422
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.