STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61435.1COG1946 Acyl-CoA thioesterase. (291 aa)    
Predicted Functional Partners:
AFK63394.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.562
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
 
 
  
 0.553
AFK61436.1
Putative O-antigen polymerase; COG3307 Lipid A core - O-antigen ligase and related enzymes.
       0.480
AFK64545.1
AMP-binding protein; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
  
  
 0.432
AFK63648.1
COG0147 Anthranilate/para-aminobenzoate synthases component I.
   
  
 0.415
AFK61979.1
COG2030 Acyl dehydratase.
 
 
 0.409
AFK60772.1
Hypothetical protein; COG2030 Acyl dehydratase.
  
 
 0.403
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.