STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61436.1Putative O-antigen polymerase; COG3307 Lipid A core - O-antigen ligase and related enzymes. (425 aa)    
Predicted Functional Partners:
AFK63086.1
COG0859 ADP-heptose:LPS heptosyltransferase.
 
 
 0.933
AFK61412.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.917
AFK61437.1
Hypothetical protein; COG0859 ADP-heptose:LPS heptosyltransferase.
 
  
 0.769
AFK64263.1
Mannose-1-phosphate guanylyltransferase-mannose-6-phosphate isomerase; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.734
AFK64280.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
  
 0.598
AFK61425.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.584
AFK61423.1
Undecaprenyl-galactosyl transferase.
  
  
 0.531
AFK61424.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.531
AFK63836.1
COG0728 Uncharacterized membrane protein, putative virulence factor.
 
   
 0.502
AFK61435.1
COG1946 Acyl-CoA thioesterase.
       0.480
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.