STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61519.1Malonate transporter subunit MadL. (94 aa)    
Predicted Functional Partners:
AFK61518.1
Malonate transporter subunit MadM; COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase.
 
   
 0.946
AFK61515.1
Malonate decarboxylase subunit delta.
 
    0.918
AFK61517.1
Malonate decarboxylase subunit alpha; COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase.
 
  
 0.915
AFK61511.1
COG1767 Triphosphoribosyl-dephospho-CoA synthetase.
 
    0.898
AFK61516.1
Malonate decarboxylase subunit alpha.
 
  
 0.884
AFK61514.1
COG0777 Acetyl-CoA carboxylase beta subunit.
 
    0.865
AFK61513.1
Malonate decarboxylase subunit gamma.
 
     0.838
AFK61520.1
Malonate transporter MadL subunit.
       0.773
AFK61510.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
  
 0.673
AFK61512.1
Malonate decarboxylase.
       0.611
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.