STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61540.1COG2188 Transcriptional regulators. (242 aa)    
Predicted Functional Partners:
AFK61355.1
COG2188 Transcriptional regulators.
  
   
 0.780
AFK64202.1
COG2188 Transcriptional regulators.
  
   
 0.768
AFK63259.1
COG2188 Transcriptional regulators.
  
     0.753
AFK64255.1
COG2188 Transcriptional regulators.
  
     0.753
AFK61829.1
COG2186 Transcriptional regulators.
  
  
 0.572
AFK62668.1
COG2186 Transcriptional regulators.
  
  
 0.548
AFK61541.1
ABC transporter substrate-binding protein; COG3181 Uncharacterized protein conserved in bacteria.
       0.501
AFK61815.1
COG2186 Transcriptional regulators.
  
  
 0.481
AFK61545.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region; COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
       0.468
AFK61542.1
Mandelate racemase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.467
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.