STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61542.1Mandelate racemase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (387 aa)    
Predicted Functional Partners:
AFK61545.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region; COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
       0.750
AFK61543.1
COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
       0.741
AFK61544.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
       0.741
AFK61541.1
ABC transporter substrate-binding protein; COG3181 Uncharacterized protein conserved in bacteria.
       0.714
AFK64086.1
COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.626
AFK62905.1
L-alanine-DL-glutamate epimerase-like protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.607
AFK61540.1
COG2188 Transcriptional regulators.
       0.467
AFK61546.1
Hypothetical protein.
 
     0.466
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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