STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61543.1COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain. (280 aa)    
Predicted Functional Partners:
AFK61544.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
 
 
 0.997
AFK61545.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region; COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
  
  0.997
AFK60959.1
Fe-S type hydro-lyase tartrate/fumarate beta region; COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
 
 
 0.980
AFK61172.1
COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
 
 0.979
AFK63996.1
COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
 
 
0.941
AFK63997.1
COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
  
  
 
0.924
AFK61170.1
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
  
 
 0.922
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 
 0.921
AFK60958.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha; COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
  
  
 
0.920
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
     
 0.905
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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