STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61547.1COG1609 Transcriptional regulators. (410 aa)    
Predicted Functional Partners:
AFK62562.1
COG1129 ABC-type sugar transport system, ATPase component.
 
 
 0.934
AFK61551.1
COG3395 Uncharacterized protein conserved in bacteria.
 
   
 0.764
AFK61550.1
RuBisCO-like protein; COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit; Belongs to the RuBisCO large chain family.
 
    0.745
AFK61549.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
     0.728
AFK63045.1
COG0642 Signal transduction histidine kinase.
  
 
 
 0.707
AFK63193.1
Family 1 extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
  
 0.689
AFK64512.1
His Kinase A phosphoacceptor domain-containing protein 13; COG4252 Predicted transmembrane sensor domain.
  
 
 
 0.685
AFK62132.1
Histidine kinase; COG0642 Signal transduction histidine kinase.
    
 
 0.676
AFK60792.1
COG0642 Signal transduction histidine kinase.
    
 
 0.633
AFK61796.1
HAMP domain-containing protein 16; COG0642 Signal transduction histidine kinase.
    
 
 0.633
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.