STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61566.1COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (169 aa)    
Predicted Functional Partners:
AFK63784.1
TRAP transporter substrate-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.801
AFK63781.1
TRAP C4-dicarboxylate transporter permease DctM; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
  
 0.787
AFK63697.1
TRAP-type C4-dicarboxylate transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.777
AFK60833.1
Hypothetical protein; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
  
 0.771
AFK61723.1
Exported solute-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.742
AFK60843.1
Tat pathway signal sequence domain-containing protein 12; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.741
AFK62936.1
Periplasmic solute-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.741
AFK64308.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.587
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.