STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61620.1COG2863 Cytochrome c553. (298 aa)    
Predicted Functional Partners:
AFK61621.1
COG2010 Cytochrome c, mono- and diheme variants.
  
 0.986
AFK60894.1
Gluconate 2-dehydrogenase; COG2010 Cytochrome c, mono- and diheme variants.
  
 0.832
AFK61243.1
COG2857 Cytochrome c1.
 
  
 0.775
AFK61618.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
     
 0.766
ampG
Muropeptide transporter; COG0477 Permeases of the major facilitator superfamily.
       0.762
AFK61242.1
Ubiquinol-cytochrome C reductase iron-sulfur subunit; COG0723 Rieske Fe-S protein.
 
  
 0.750
AFK63444.1
Cytochrome C-552 1; COG2863 Cytochrome c553.
 
     0.700
AFK63751.1
COG2010 Cytochrome c, mono- and diheme variants.
  
 0.607
AFK61497.1
Hypothetical protein; COG3245 Cytochrome c5.
 
   
 0.562
AFK61207.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
   
 0.547
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.