STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK61621.1COG2010 Cytochrome c, mono- and diheme variants. (422 aa)    
Predicted Functional Partners:
AFK61620.1
COG2863 Cytochrome c553.
  
 0.986
AFK62693.1
COG3258 Cytochrome c.
 
 
 0.942
AFK63750.1
Aldehyde dehydrogenase; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
  
 0.919
AFK62387.1
Cytochrome C oxidase subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.882
AFK61242.1
Ubiquinol-cytochrome C reductase iron-sulfur subunit; COG0723 Rieske Fe-S protein.
 
 
 0.820
AFK60940.1
Aldehyde dehydrogenase; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
   
 0.788
AFK61618.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.762
ampG
Muropeptide transporter; COG0477 Permeases of the major facilitator superfamily.
       0.762
AFK63757.1
Isoquinoline 1-oxidoreductase subunit beta; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
   
 0.756
AFK64497.1
Putative glucose dehydrogenase subunit alpha; COG2303 Choline dehydrogenase and related flavoproteins.
 
 
 0.703
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.